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Welcome to PhenomeDB's documentation
====================================

**PhenomeDB** (/fee-gnome-dee-bee/) is a platform for harmonising and integrating metabolomics data across multiple projects.

PhenomeDB was developed by the informatics team at the National Phenome Centre at Imperial College London.

Getting started
---------------

Please see the following guides for installing and using PhenomeDB

A. :ref:`installation`
B. :ref:`usage`
C. :ref:`api`
D. :ref:`development`

.. toctree::
   installation
   usage
   api
   development
   analysis
   batch_correction
   base_view
   cache
   compounds
   database
   imports
   metadata
   models
   pipeline_factory
   pipelines
   query_factory
   task
   utilities
   views
   :maxdepth: 2
   :caption: Contents:


Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`